gamtools resolution_qc tool is used to perform some basic QC checks
on a segregation table. This allows the user to generate segregation tables
at a variety of resolutions, then check each resolution to determine the
minimum window size that can be used for this specific dataset.
This tool requires a segregation table, plus the thickness of each NP and the average nuclear radius (in any units as long as both parameters are specified in the same way).
Usage and option summary¶
gamtools resolution_qc [-x CHROM [CHROM ...]] [-g GENOME_SIZE] [-p NPS_PER_SAMPLE] [-i] SEGREGATION_TABLE SLICE_THICKNESS NUCLEAR_RADIUS