convert¶
The gamtools convert tool is used to convert proximity matrices output by GAMtools to/from
various different formats.
Usage and option summary¶
Usage:
gamtools convert [OPTIONS] <INPUT_MATRIX> <OUTPUT_MATRIX>
Optional parameters:
| Option | Description |
|---|---|
| -i, –input-format | Input matrix file format |
| -o, –output-format | Output matrix file format |
| -t, –thresholds-file | Thresholds file. If specified, any values lower than the specified thresholds will be masked/excluded from the output file |
| -w, –windows-file | File containing the genomic locations of matrix bins (only required if not specified in input matrix file). |
| -r, –region | Region covered by the input matrix (required if -w /–windows-file is specified) |