The gamtools resolution_qc tool is used to perform some basic QC checks on a segregation table. This allows the user to generate segregation tables at a variety of resolutions, then check each resolution to determine the minimum window size that can be used for this specific dataset.

This tool requires a segregation table, plus the thickness of each NP and the average nuclear radius (in any units as long as both parameters are specified in the same way).

Usage and option summary


gamtools resolution_qc [-x CHROM [CHROM ...]] [-g GENOME_SIZE]
                       [-p NPS_PER_SAMPLE] [-i] SEGREGATION_TABLE